Wave container build completion
Container build completed successfully!
Summary
Container file
FROM mambaorg/micromamba:1.5.8-lunar
COPY --chown=$MAMBA_USER:$MAMBA_USER conda.yml /tmp/conda.yml
RUN micromamba install -y -n base -f /tmp/conda.yml \
&& micromamba install -y -n base conda-forge::procps-ng \
&& micromamba clean -a -y
USER root
ENV PATH="$MAMBA_ROOT_PREFIX/bin:$PATH"
Conda file
channels:
- conda-forge
- bioconda
dependencies:
- bioconda::sylph=0.6.1
Build logs
#1 [internal] load build definition from Containerfile
#1 transferring dockerfile: 337B 0.0s done
#1 DONE 0.0s
#2 [internal] load metadata for docker.io/mambaorg/micromamba:1.5.8-lunar
#2 DONE 1.1s
#3 [internal] load .dockerignore
#3 transferring context: 2B done
#3 DONE 0.0s
#4 [internal] load build context
#4 DONE 0.0s
#5 [1/3] FROM docker.io/mambaorg/micromamba:1.5.8-lunar@sha256:fafa9863f36c58a6d69033a1c7b8326d727305ede7c7c9cc867fe2010531f5ae
#5 resolve docker.io/mambaorg/micromamba:1.5.8-lunar@sha256:fafa9863f36c58a6d69033a1c7b8326d727305ede7c7c9cc867fe2010531f5ae 0.0s done
#5 DONE 0.0s
#6 [auth] sharing credentials for 195996028523.dkr.ecr.eu-west-1.amazonaws.com
#6 DONE 0.0s
#7 importing cache manifest from 195996028523.dkr.ecr.eu-west-1.amazonaws.com/wave/build/cache:83e6a49ae3591943
#7 ERROR: failed to configure registry cache importer: 195996028523.dkr.ecr.eu-west-1.amazonaws.com/wave/build/cache:83e6a49ae3591943: not found
#4 [internal] load build context
#4 transferring context: 109B done
#4 DONE 0.1s
#5 [1/3] FROM docker.io/mambaorg/micromamba:1.5.8-lunar@sha256:fafa9863f36c58a6d69033a1c7b8326d727305ede7c7c9cc867fe2010531f5ae
#5 DONE 0.2s
#5 [1/3] FROM docker.io/mambaorg/micromamba:1.5.8-lunar@sha256:fafa9863f36c58a6d69033a1c7b8326d727305ede7c7c9cc867fe2010531f5ae
#5 sha256:6f63df1cb8dd88eaeb90664607de9e89b14dc80edbc0036c04766e0354d1d7a4 346B / 346B 0.1s done
#5 sha256:ba94160d36b7deda51b8adb4b3454e09b69351e492c4ba5fc9e013141b791c20 649B / 649B 0.2s done
#5 sha256:f628b9cff8d1fca195e3e0e46a62f6cc2649e3ab5f52ad0b584ff1c27a00ee49 0B / 685B 0.2s
#5 sha256:c864db06f68bde3e935ec5d482c1c63575cde16d0492a2f0a4d66ef76d1fbce5 0B / 217B 0.2s
#5 sha256:f628b9cff8d1fca195e3e0e46a62f6cc2649e3ab5f52ad0b584ff1c27a00ee49 685B / 685B 0.3s done
#5 sha256:4f4fb700ef54461cfa02571ae0db9a0dc1e0cdb5577484a6d75e68dc38e8acc1 0B / 32B 0.2s
#5 sha256:c864db06f68bde3e935ec5d482c1c63575cde16d0492a2f0a4d66ef76d1fbce5 217B / 217B 0.3s done
#5 sha256:4f4fb700ef54461cfa02571ae0db9a0dc1e0cdb5577484a6d75e68dc38e8acc1 32B / 32B 0.2s done
#5 sha256:77c7a930b7cc5b2ef4bc0b220ae5f667fb72367378062f5c3413f351d8a36537 4.08kB / 4.08kB 0.1s done
#5 sha256:5ac55ff04773eac7cebaba969418b043fb8730cdf0c06a304947e2829843de29 284B / 284B 0.1s done
#5 sha256:7834e8feb90464229ef06c52cb68bce75046c5e9cc4ff5bb8d378a37babaa67c 523B / 523B 0.1s done
#5 sha256:7716ca30060043d1c1ba35c09e8eb2fda19788fc0d5ec491d85e866306207cc9 0B / 6.06MB 0.2s
#5 sha256:2ec3f7ad9b3ca7370ae62c6bdb36e3575239b5b0942163d36814c87efb3ff90d 119.85kB / 119.85kB 0.1s done
#5 sha256:6360b371721185fefbbad6763ab745900f1b2f7714570234473232dd575fc07f 1.05MB / 26.89MB 0.2s
#5 sha256:7716ca30060043d1c1ba35c09e8eb2fda19788fc0d5ec491d85e866306207cc9 6.06MB / 6.06MB 0.3s done
#5 sha256:6360b371721185fefbbad6763ab745900f1b2f7714570234473232dd575fc07f 7.34MB / 26.89MB 0.3s
#5 sha256:6360b371721185fefbbad6763ab745900f1b2f7714570234473232dd575fc07f 9.44MB / 26.89MB 0.5s
#5 sha256:6360b371721185fefbbad6763ab745900f1b2f7714570234473232dd575fc07f 26.89MB / 26.89MB 0.6s
#5 sha256:6360b371721185fefbbad6763ab745900f1b2f7714570234473232dd575fc07f 26.89MB / 26.89MB 0.6s done
#5 extracting sha256:6360b371721185fefbbad6763ab745900f1b2f7714570234473232dd575fc07f
#5 extracting sha256:6360b371721185fefbbad6763ab745900f1b2f7714570234473232dd575fc07f 0.8s done
#5 DONE 2.0s
#5 [1/3] FROM docker.io/mambaorg/micromamba:1.5.8-lunar@sha256:fafa9863f36c58a6d69033a1c7b8326d727305ede7c7c9cc867fe2010531f5ae
#5 extracting sha256:2ec3f7ad9b3ca7370ae62c6bdb36e3575239b5b0942163d36814c87efb3ff90d
#5 extracting sha256:2ec3f7ad9b3ca7370ae62c6bdb36e3575239b5b0942163d36814c87efb3ff90d 0.2s done
#5 DONE 2.2s
#5 [1/3] FROM docker.io/mambaorg/micromamba:1.5.8-lunar@sha256:fafa9863f36c58a6d69033a1c7b8326d727305ede7c7c9cc867fe2010531f5ae
#5 extracting sha256:7716ca30060043d1c1ba35c09e8eb2fda19788fc0d5ec491d85e866306207cc9
#5 extracting sha256:7716ca30060043d1c1ba35c09e8eb2fda19788fc0d5ec491d85e866306207cc9 0.3s done
#5 DONE 2.6s
#5 [1/3] FROM docker.io/mambaorg/micromamba:1.5.8-lunar@sha256:fafa9863f36c58a6d69033a1c7b8326d727305ede7c7c9cc867fe2010531f5ae
#5 extracting sha256:4f4fb700ef54461cfa02571ae0db9a0dc1e0cdb5577484a6d75e68dc38e8acc1
#5 extracting sha256:4f4fb700ef54461cfa02571ae0db9a0dc1e0cdb5577484a6d75e68dc38e8acc1 0.2s done
#5 DONE 2.8s
#5 [1/3] FROM docker.io/mambaorg/micromamba:1.5.8-lunar@sha256:fafa9863f36c58a6d69033a1c7b8326d727305ede7c7c9cc867fe2010531f5ae
#5 extracting sha256:7834e8feb90464229ef06c52cb68bce75046c5e9cc4ff5bb8d378a37babaa67c
#5 extracting sha256:7834e8feb90464229ef06c52cb68bce75046c5e9cc4ff5bb8d378a37babaa67c 0.2s done
#5 DONE 3.1s
#5 [1/3] FROM docker.io/mambaorg/micromamba:1.5.8-lunar@sha256:fafa9863f36c58a6d69033a1c7b8326d727305ede7c7c9cc867fe2010531f5ae
#5 extracting sha256:5ac55ff04773eac7cebaba969418b043fb8730cdf0c06a304947e2829843de29
#5 extracting sha256:5ac55ff04773eac7cebaba969418b043fb8730cdf0c06a304947e2829843de29 0.2s done
#5 DONE 3.3s
#5 [1/3] FROM docker.io/mambaorg/micromamba:1.5.8-lunar@sha256:fafa9863f36c58a6d69033a1c7b8326d727305ede7c7c9cc867fe2010531f5ae
#5 extracting sha256:77c7a930b7cc5b2ef4bc0b220ae5f667fb72367378062f5c3413f351d8a36537
#5 extracting sha256:77c7a930b7cc5b2ef4bc0b220ae5f667fb72367378062f5c3413f351d8a36537 0.2s done
#5 DONE 3.5s
#5 [1/3] FROM docker.io/mambaorg/micromamba:1.5.8-lunar@sha256:fafa9863f36c58a6d69033a1c7b8326d727305ede7c7c9cc867fe2010531f5ae
#5 extracting sha256:4f4fb700ef54461cfa02571ae0db9a0dc1e0cdb5577484a6d75e68dc38e8acc1 0.2s done
#5 DONE 3.8s
#5 [1/3] FROM docker.io/mambaorg/micromamba:1.5.8-lunar@sha256:fafa9863f36c58a6d69033a1c7b8326d727305ede7c7c9cc867fe2010531f5ae
#5 extracting sha256:c864db06f68bde3e935ec5d482c1c63575cde16d0492a2f0a4d66ef76d1fbce5
#5 extracting sha256:c864db06f68bde3e935ec5d482c1c63575cde16d0492a2f0a4d66ef76d1fbce5 0.4s done
#5 DONE 4.1s
#5 [1/3] FROM docker.io/mambaorg/micromamba:1.5.8-lunar@sha256:fafa9863f36c58a6d69033a1c7b8326d727305ede7c7c9cc867fe2010531f5ae
#5 extracting sha256:f628b9cff8d1fca195e3e0e46a62f6cc2649e3ab5f52ad0b584ff1c27a00ee49
#5 extracting sha256:f628b9cff8d1fca195e3e0e46a62f6cc2649e3ab5f52ad0b584ff1c27a00ee49 0.2s done
#5 DONE 4.4s
#5 [1/3] FROM docker.io/mambaorg/micromamba:1.5.8-lunar@sha256:fafa9863f36c58a6d69033a1c7b8326d727305ede7c7c9cc867fe2010531f5ae
#5 extracting sha256:ba94160d36b7deda51b8adb4b3454e09b69351e492c4ba5fc9e013141b791c20
#5 extracting sha256:ba94160d36b7deda51b8adb4b3454e09b69351e492c4ba5fc9e013141b791c20 0.3s done
#5 extracting sha256:6f63df1cb8dd88eaeb90664607de9e89b14dc80edbc0036c04766e0354d1d7a4
#5 extracting sha256:6f63df1cb8dd88eaeb90664607de9e89b14dc80edbc0036c04766e0354d1d7a4 0.3s done
#5 DONE 4.9s
#8 [2/3] COPY --chown=mambauser:mambauser conda.yml /tmp/conda.yml
#8 DONE 0.2s
#9 [3/3] RUN micromamba install -y -n base -f /tmp/conda.yml && micromamba install -y -n base conda-forge::procps-ng && micromamba clean -a -y
#9 18.21
#9 18.21 Transaction
#9 18.21
#9 18.21 Prefix: /opt/conda
#9 18.21
#9 18.21 Updating specs:
#9 18.21
#9 18.21 - bioconda::sylph=0.6.1
#9 18.21
#9 18.21
#9 18.21 Package Version Build Channel Size
#9 18.21 ────────────────────────────────────────────────────────────────
#9 18.21 Install:
#9 18.21 ────────────────────────────────────────────────────────────────
#9 18.21
#9 18.21 + _libgcc_mutex 0.1 conda_forge conda-forge 3kB
#9 18.21 + libgomp 14.1.0 h77fa898_1 conda-forge 460kB
#9 18.21 + _openmp_mutex 4.5 2_gnu conda-forge 24kB
#9 18.21 + libgcc 14.1.0 h77fa898_1 conda-forge 846kB
#9 18.21 + libstdcxx 14.1.0 hc0a3c3a_1 conda-forge 4MB
#9 18.21 + libgcc-ng 14.1.0 h69a702a_1 conda-forge 52kB
#9 18.21 + libstdcxx-ng 14.1.0 h4852527_1 conda-forge 52kB
#9 18.21 + sylph 0.6.1 h4ac6f70_0 bioconda 707kB
#9 18.21
#9 18.21 Summary:
#9 18.21
#9 18.21 Install: 8 packages
#9 18.21
#9 18.21 Total download: 6MB
#9 18.21
#9 18.21 ────────────────────────────────────────────────────────────────
#9 18.21
#9 18.21
#9 18.21
#9 18.21 Transaction starting
#9 19.48 Linking _libgcc_mutex-0.1-conda_forge
#9 19.48 Linking libgomp-14.1.0-h77fa898_1
#9 19.48 Linking _openmp_mutex-4.5-2_gnu
#9 19.48 Linking libgcc-14.1.0-h77fa898_1
#9 19.48 Linking libstdcxx-14.1.0-hc0a3c3a_1
#9 19.48 Linking libgcc-ng-14.1.0-h69a702a_1
#9 19.48 Linking libstdcxx-ng-14.1.0-h4852527_1
#9 19.48 Linking sylph-0.6.1-h4ac6f70_0
#9 19.49
#9 19.49 Transaction finished
#9 19.49
#9 19.49 To activate this environment, use:
#9 19.49
#9 19.49 micromamba activate base
#9 19.49
#9 19.49 Or to execute a single command in this environment, use:
#9 19.49
#9 19.49 micromamba run -n base mycommand
#9 19.49
#9 19.52 conda-forge/linux-64 Using cache
#9 19.52 conda-forge/noarch Using cache
#9 22.23
#9 22.23 Transaction
#9 22.23
#9 22.23 Prefix: /opt/conda
#9 22.23
#9 22.23 Updating specs:
#9 22.23
#9 22.23 - conda-forge::procps-ng
#9 22.23
#9 22.23
#9 22.23 Package Version Build Channel Size
#9 22.23 ───────────────────────────────────────────────────────────
#9 22.23 Install:
#9 22.23 ───────────────────────────────────────────────────────────
#9 22.23
#9 22.23 + ncurses 6.5 he02047a_1 conda-forge 889kB
#9 22.23 + procps-ng 4.0.4 hf303867_0 conda-forge 552kB
#9 22.23
#9 22.23 Summary:
#9 22.23
#9 22.23 Install: 2 packages
#9 22.23
#9 22.23 Total download: 1MB
#9 22.23
#9 22.23 ───────────────────────────────────────────────────────────
#9 22.23
#9 22.23
#9 22.23
#9 22.23 Transaction starting
#9 23.16 Linking ncurses-6.5-he02047a_1
#9 24.83 Linking procps-ng-4.0.4-hf303867_0
#9 24.83
#9 24.83 Transaction finished
#9 24.83
#9 24.83 To activate this environment, use:
#9 24.83
#9 24.83 micromamba activate base
#9 24.83
#9 24.83 Or to execute a single command in this environment, use:
#9 24.83
#9 24.83 micromamba run -n base mycommand
#9 24.83
#9 24.87 Collect information..
#9 24.87 Cleaning index cache..
#9 24.93 Cleaning lock files..
#9 24.93 Package file Size
#9 24.93 ──────────────────────────────────────────────────
#9 24.93 /opt/conda/pkgs
#9 24.93 ──────────────────────────────────────────────────
#9 24.93
#9 24.93 _libgcc_mutex-0.1-conda_forge.tar.bz2 3kB
#9 24.93 _openmp_mutex-4.5-2_gnu.tar.bz2 24kB
#9 24.93 libgcc-14.1.0-h77fa898_1.conda 846kB
#9 24.93 libgcc-ng-14.1.0-h69a702a_1.conda 52kB
#9 24.93 libgomp-14.1.0-h77fa898_1.conda 460kB
#9 24.93 libstdcxx-14.1.0-hc0a3c3a_1.conda 4MB
#9 24.93 libstdcxx-ng-14.1.0-h4852527_1.conda 52kB
#9 24.93 ncurses-6.5-he02047a_1.conda 889kB
#9 24.93 procps-ng-4.0.4-hf303867_0.conda 552kB
#9 24.93 sylph-0.6.1-h4ac6f70_0.tar.bz2 707kB
#9 24.93
#9 24.93 /home/mambauser/.mamba/pkgs
#9 24.93 ──────────────────────────────────────────────────
#9 24.93
#9 24.93
#9 24.93
#9 24.93 ──────────────────────────────────────────────────
#9 24.93
#9 24.93 Total size: 7MB
#9 24.93 Cleaning tarballs..
#9 24.93 Cleaning packages..
#9 DONE 24.9s
#10 exporting to image
#10 exporting layers
#10 exporting layers 2.0s done
#10 ...
#11 [auth] library/sylph:pull,push token for community.wave.seqera.io
#11 DONE 0.0s
#10 exporting to image
#10 exporting manifest sha256:942963d30e9894f07293fc3e2f9d0bb41b8d6eb9bcf87e3e3363f4011722ddd8 done
#10 exporting config sha256:1047e3dc18e0897cf5db7bc61970cbe0f2153f5a830df359db414b2587c8f142 done
#10 pushing layers
#10 pushing layers 2.7s done
#10 pushing manifest for community.wave.seqera.io/library/sylph:0.6.1--83e6a49ae3591943@sha256:942963d30e9894f07293fc3e2f9d0bb41b8d6eb9bcf87e3e3363f4011722ddd8
#10 pushing manifest for community.wave.seqera.io/library/sylph:0.6.1--83e6a49ae3591943@sha256:942963d30e9894f07293fc3e2f9d0bb41b8d6eb9bcf87e3e3363f4011722ddd8 0.2s done
#10 DONE 4.8s
#12 exporting cache to registry
#12 preparing build cache for export
#12 writing layer sha256:2ec3f7ad9b3ca7370ae62c6bdb36e3575239b5b0942163d36814c87efb3ff90d 0.1s done
#12 writing layer sha256:4f4fb700ef54461cfa02571ae0db9a0dc1e0cdb5577484a6d75e68dc38e8acc1 done
#12 writing layer sha256:5ac55ff04773eac7cebaba969418b043fb8730cdf0c06a304947e2829843de29
#12 writing layer sha256:5ac55ff04773eac7cebaba969418b043fb8730cdf0c06a304947e2829843de29 0.0s done
#12 writing layer sha256:6360b371721185fefbbad6763ab745900f1b2f7714570234473232dd575fc07f 0.0s done
#12 writing layer sha256:6f63df1cb8dd88eaeb90664607de9e89b14dc80edbc0036c04766e0354d1d7a4 0.0s done
#12 writing layer sha256:7716ca30060043d1c1ba35c09e8eb2fda19788fc0d5ec491d85e866306207cc9
#12 writing layer sha256:7716ca30060043d1c1ba35c09e8eb2fda19788fc0d5ec491d85e866306207cc9 0.0s done
#12 writing layer sha256:77c7a930b7cc5b2ef4bc0b220ae5f667fb72367378062f5c3413f351d8a36537 0.0s done
#12 writing layer sha256:7834e8feb90464229ef06c52cb68bce75046c5e9cc4ff5bb8d378a37babaa67c 0.0s done
#12 writing layer sha256:b2c231da0a3934a592c2e4620908d1ea5d8a48388ce732429393d158a31197c6
#12 writing layer sha256:b2c231da0a3934a592c2e4620908d1ea5d8a48388ce732429393d158a31197c6 0.3s done
#12 writing layer sha256:ba94160d36b7deda51b8adb4b3454e09b69351e492c4ba5fc9e013141b791c20
#12 writing layer sha256:ba94160d36b7deda51b8adb4b3454e09b69351e492c4ba5fc9e013141b791c20 0.0s done
#12 writing layer sha256:c864db06f68bde3e935ec5d482c1c63575cde16d0492a2f0a4d66ef76d1fbce5 0.0s done
#12 writing layer sha256:f628b9cff8d1fca195e3e0e46a62f6cc2649e3ab5f52ad0b584ff1c27a00ee49 0.0s done
#12 writing layer sha256:fa714b9dea3d42f9ac71aa7fd483ed8e63f36ab1503c99fa1c69fb31bd1b52cc
#12 writing layer sha256:fa714b9dea3d42f9ac71aa7fd483ed8e63f36ab1503c99fa1c69fb31bd1b52cc 0.7s done
#12 writing config sha256:587912e372026b60ea3d737d1dba3481fcc105e94daeb7e840d69037d45a2bf4
#12 writing config sha256:587912e372026b60ea3d737d1dba3481fcc105e94daeb7e840d69037d45a2bf4 0.4s done
#12 writing cache image manifest sha256:161aeccdd5ded906ac11e62e957c6769f1f7cd9b3031f4a5ef252e425adc32e4
#12 preparing build cache for export 2.2s done
#12 writing cache image manifest sha256:161aeccdd5ded906ac11e62e957c6769f1f7cd9b3031f4a5ef252e425adc32e4 0.3s done
#12 DONE 2.2s
------
> importing cache manifest from 195996028523.dkr.ecr.eu-west-1.amazonaws.com/wave/build/cache:83e6a49ae3591943:
------
